Index

_

__commit_id__ (in module causal_testing._version) __eq__() (causal_testing.testing.metamorphic_relation.MetamorphicRelation method) __post_init__() (causal_testing.testing.base_test_case.BaseTestCase method) __repr__() (causal_testing.specification.variable.Variable method) __str__() (causal_testing.specification.causal_dag.CausalDAG method) (causal_testing.testing.causal_effect.CausalEffect method) (causal_testing.testing.causal_effect.ExactValue method) (causal_testing.testing.causal_test_case.CausalTestCase method) (causal_testing.testing.causal_test_result.CausalTestResult method) (causal_testing.testing.intervention.Intervention method) (causal_testing.testing.metamorphic_relation.ShouldCause method) (causal_testing.testing.metamorphic_relation.ShouldNotCause method)

__version__ (in module causal_testing) (in module causal_testing._version) __version_tuple__ (in module causal_testing._version) _convert_prim() (causal_testing.estimation.genetic_programming_regression_fitter.GP method) _get_confidence_intervals() (causal_testing.estimation.linear_regression_estimator.LinearRegressionEstimator method) _json_stub_params() (causal_testing.discovery.abstract_discovery.Discovery method) _predict() (causal_testing.estimation.abstract_regression_estimator.RegressionEstimator method) _read_dataframe() (causal_testing.main.CausalTestingFramework method) _stringify_for_sympy() (causal_testing.estimation.genetic_programming_regression_fitter.GP method)

A

add_edge() (causal_testing.specification.causal_dag.CausalDAG method) add_modelling_assumptions() (causal_testing.estimation.abstract_estimator.Estimator method) (causal_testing.estimation.abstract_regression_estimator.RegressionEstimator method) (causal_testing.estimation.experimental_estimator.ExperimentalEstimator method) (causal_testing.estimation.instrumental_variable_estimator.InstrumentalVariableEstimator method) (causal_testing.estimation.ipcw_estimator.IPCWEstimator method) (causal_testing.estimation.logistic_regression_estimator.LogisticRegressionEstimator method) (causal_testing.estimation.multinomial_regression_estimator.MultinomialRegressionEstimator method)

adjustment_set_is_minimal() (causal_testing.specification.causal_dag.CausalDAG method) adjustment_vars (causal_testing.testing.metamorphic_relation.MetamorphicRelation attribute) apply() (causal_testing.testing.causal_effect.CausalEffect method) (causal_testing.testing.causal_effect.ExactValue method) (causal_testing.testing.causal_effect.Negative method) (causal_testing.testing.causal_effect.NoEffect method) (causal_testing.testing.causal_effect.Positive method) (causal_testing.testing.causal_effect.SomeEffect method) (causal_testing.testing.intervention.Intervention method)

B

base_test_case (causal_testing.testing.metamorphic_relation.MetamorphicRelation attribute)

BaseTestCase (class in causal_testing.testing.base_test_case) binary_string_to_causal_dag() (causal_testing.discovery.nsga_discovery.NSGADiscovery method)

C

Causal DAG Causal inference Causal Test Case causal_dag_to_binary_string() (causal_testing.discovery.nsga_discovery.NSGADiscovery method) causal_testing module causal_testing.__main__ module causal_testing._version module causal_testing.discovery module causal_testing.discovery.abstract_discovery module causal_testing.discovery.hill_climber_discovery module causal_testing.discovery.nsga_discovery module causal_testing.estimation module causal_testing.estimation.abstract_estimator module causal_testing.estimation.abstract_regression_estimator module causal_testing.estimation.cubic_spline_estimator module causal_testing.estimation.effect_estimate module causal_testing.estimation.experimental_estimator module causal_testing.estimation.genetic_programming_regression_fitter module causal_testing.estimation.instrumental_variable_estimator module causal_testing.estimation.ipcw_estimator module causal_testing.estimation.linear_regression_estimator module causal_testing.estimation.logistic_regression_estimator module causal_testing.estimation.multinomial_regression_estimator module causal_testing.main module causal_testing.specification module causal_testing.specification.causal_dag module causal_testing.specification.scenario module causal_testing.specification.variable module causal_testing.surrogate module

causal_testing.surrogate.causal_surrogate_assisted module causal_testing.surrogate.surrogate_search_algorithms module causal_testing.testing module causal_testing.testing.base_test_case module causal_testing.testing.causal_effect module causal_testing.testing.causal_test_adequacy module causal_testing.testing.causal_test_case module causal_testing.testing.causal_test_result module causal_testing.testing.effect module causal_testing.testing.intervention module causal_testing.testing.metamorphic_relation module causal_testing.utils module causal_testing.utils.validation module CausalDAG (class in causal_testing.specification.causal_dag) CausalEffect (class in causal_testing.testing.causal_effect) CausalSurrogateAssistedTestCase (class in causal_testing.surrogate.causal_surrogate_assisted) CausalTestCase (class in causal_testing.testing.causal_test_case) CausalTestingFramework (class in causal_testing.main) CausalTestingPaths (class in causal_testing.main) CausalTestResult (class in causal_testing.testing.causal_test_result) CausalValidator (class in causal_testing.utils.validation) check_iv_assumptions() (causal_testing.specification.causal_dag.CausalDAG method) ci_high (causal_testing.estimation.effect_estimate.EffectEstimate attribute) ci_low (causal_testing.estimation.effect_estimate.EffectEstimate attribute) ci_valid() (causal_testing.estimation.effect_estimate.EffectEstimate method) close_separator() (in module causal_testing.specification.causal_dag) Command (class in causal_testing.main) commit_id (in module causal_testing._version) compute_confidence_intervals() (causal_testing.estimation.abstract_estimator.Estimator method) constructive_backdoor_criterion() (causal_testing.specification.causal_dag.CausalDAG method) copy() (causal_testing.specification.variable.Variable method) create_base_test() (causal_testing.main.CausalTestingFramework method) create_causal_test() (causal_testing.main.CausalTestingFramework method) create_gene_types() (causal_testing.surrogate.surrogate_search_algorithms.GeneticSearchAlgorithm static method) create_power_function() (in module causal_testing.estimation.genetic_programming_regression_fitter) create_test_cases() (causal_testing.main.CausalTestingFramework method) create_variables() (causal_testing.main.CausalTestingFramework method) CubicSplineRegressionEstimator (class in causal_testing.estimation.cubic_spline_estimator) cycle_nodes() (causal_testing.specification.causal_dag.CausalDAG method)

D

DAG dag_path (causal_testing.main.CausalTestingPaths attribute) DAGAdequacy (class in causal_testing.testing.causal_test_adequacy) data (causal_testing.surrogate.causal_surrogate_assisted.SimulationResult attribute) data_paths (causal_testing.main.CausalTestingPaths attribute) DataAdequacy (class in causal_testing.testing.causal_test_adequacy) datatype (causal_testing.specification.variable.Variable attribute) DIRECT (causal_testing.testing.effect.Effect attribute)

direct_effect_adjustment_sets() (causal_testing.specification.causal_dag.CausalDAG method) Directed acyclic graph DISCOVER (causal_testing.main.Command attribute) discover() (causal_testing.discovery.abstract_discovery.Discovery method) (causal_testing.discovery.hill_climber_discovery.HillClimberDiscovery method) (causal_testing.discovery.nsga_discovery.NSGADiscovery method) Discovery (class in causal_testing.discovery.abstract_discovery) distribution (causal_testing.specification.variable.Variable attribute)

E

effect (causal_testing.testing.base_test_case.BaseTestCase attribute) Effect (class in causal_testing.testing.effect) effect_direction() (in module causal_testing.discovery.abstract_discovery) EffectEstimate (class in causal_testing.estimation.effect_estimate) enumerate_minimal_adjustment_sets() (causal_testing.specification.causal_dag.CausalDAG method) Estimate Type estimate_ate() (causal_testing.estimation.experimental_estimator.ExperimentalEstimator method) (causal_testing.estimation.linear_regression_estimator.LinearRegressionEstimator method) estimate_ate_calculated() (causal_testing.estimation.cubic_spline_estimator.CubicSplineRegressionEstimator method) (causal_testing.estimation.linear_regression_estimator.LinearRegressionEstimator method) estimate_coefficient() (causal_testing.estimation.instrumental_variable_estimator.InstrumentalVariableEstimator method) (causal_testing.estimation.linear_regression_estimator.LinearRegressionEstimator method) estimate_e_value() (causal_testing.utils.validation.CausalValidator static method) estimate_e_value_using_ci() (causal_testing.utils.validation.CausalValidator static method)

estimate_hazard_ratio() (causal_testing.estimation.ipcw_estimator.IPCWEstimator method) estimate_risk_ratio() (causal_testing.estimation.experimental_estimator.ExperimentalEstimator method) (causal_testing.estimation.linear_regression_estimator.LinearRegressionEstimator method) estimate_robustness() (causal_testing.utils.validation.CausalValidator static method) estimate_unit_odds_ratio() (causal_testing.estimation.logistic_regression_estimator.LogisticRegressionEstimator method) (causal_testing.estimation.multinomial_regression_estimator.MultinomialRegressionEstimator method) Estimator (class in causal_testing.estimation.abstract_estimator) evaluate_fitness() (causal_testing.discovery.hill_climber_discovery.HillClimberDiscovery method) evaluate_tests() (causal_testing.discovery.abstract_discovery.Discovery method) ExactValue (class in causal_testing.testing.causal_effect) exclude_edges_path (causal_testing.main.CausalTestingPaths attribute) execute() (causal_testing.surrogate.causal_surrogate_assisted.CausalSurrogateAssistedTestCase method) execute_test() (causal_testing.testing.causal_test_case.CausalTestCase method) ExperimentalEstimator (class in causal_testing.estimation.experimental_estimator)

F

fault (causal_testing.surrogate.causal_surrogate_assisted.SimulationResult attribute) fit_model() (causal_testing.estimation.abstract_regression_estimator.RegressionEstimator method) (causal_testing.estimation.cubic_spline_estimator.CubicSplineRegressionEstimator method)

fitness() (causal_testing.estimation.genetic_programming_regression_fitter.GP method)

G

GENERATE (causal_testing.main.Command attribute) generate_causal_tests() (in module causal_testing.testing.metamorphic_relation) generate_metamorphic_relation() (in module causal_testing.testing.metamorphic_relation) generate_metamorphic_relations() (in module causal_testing.testing.metamorphic_relation) generate_surrogates() (causal_testing.surrogate.causal_surrogate_assisted.CausalSurrogateAssistedTestCase method) GeneticSearchAlgorithm (class in causal_testing.surrogate.surrogate_search_algorithms)

get_ancestor_graph() (causal_testing.specification.causal_dag.CausalDAG method) get_backdoor_graph() (causal_testing.specification.causal_dag.CausalDAG method) get_indirect_graph() (causal_testing.specification.causal_dag.CausalDAG method) get_proper_backdoor_graph() (causal_testing.specification.causal_dag.CausalDAG method) GP (class in causal_testing.estimation.genetic_programming_regression_fitter) gp_formula() (causal_testing.estimation.linear_regression_estimator.LinearRegressionEstimator method)

H

hidden_variables() (causal_testing.specification.scenario.Scenario method)

HillClimberDiscovery (class in causal_testing.discovery.hill_climber_discovery)

I

identification() (causal_testing.specification.causal_dag.CausalDAG method) include_edges_path (causal_testing.main.CausalTestingPaths attribute) Input (class in causal_testing.specification.variable) InstrumentalVariableEstimator (class in causal_testing.estimation.instrumental_variable_estimator) Intervention (class in causal_testing.testing.intervention)

IPCWEstimator (class in causal_testing.estimation.ipcw_estimator) is_acyclic() (causal_testing.specification.causal_dag.CausalDAG method) is_match() (in module causal_testing.discovery.abstract_discovery) iv_coefficient() (causal_testing.estimation.instrumental_variable_estimator.InstrumentalVariableEstimator method)

L

LinearRegressionEstimator (class in causal_testing.estimation.linear_regression_estimator) list_all_min_sep() (in module causal_testing.specification.causal_dag) load_dag() (causal_testing.main.CausalTestingFramework method) load_data() (causal_testing.main.CausalTestingFramework method) load_tests() (causal_testing.main.CausalTestingFramework method) logger (in module causal_testing) (in module causal_testing.estimation.abstract_estimator) (in module causal_testing.estimation.abstract_regression_estimator) (in module causal_testing.estimation.cubic_spline_estimator) (in module causal_testing.estimation.instrumental_variable_estimator) (in module causal_testing.estimation.ipcw_estimator) (in module causal_testing.estimation.linear_regression_estimator) (in module causal_testing.estimation.logistic_regression_estimator) (in module causal_testing.estimation.multinomial_regression_estimator) (in module causal_testing.main) (in module causal_testing.specification.causal_dag) (in module causal_testing.surrogate.causal_surrogate_assisted) (in module causal_testing.testing.causal_test_adequacy) (in module causal_testing.testing.causal_test_case) (in module causal_testing.testing.metamorphic_relation)

LogisticRegressionEstimator (class in causal_testing.estimation.logistic_regression_estimator)

M

main() (in module causal_testing.__main__) make_offspring() (causal_testing.estimation.genetic_programming_regression_fitter.GP method) measure_adequacy() (causal_testing.testing.causal_test_adequacy.DAGAdequacy method) (causal_testing.testing.causal_test_adequacy.DataAdequacy method) Meta (class in causal_testing.specification.variable) MetamorphicRelation (class in causal_testing.testing.metamorphic_relation) min_adj_set() (in module causal_testing.testing.metamorphic_relation) Minimal Adjustment Set module causal_testing causal_testing.__main__ causal_testing._version causal_testing.discovery causal_testing.discovery.abstract_discovery causal_testing.discovery.hill_climber_discovery causal_testing.discovery.nsga_discovery causal_testing.estimation causal_testing.estimation.abstract_estimator causal_testing.estimation.abstract_regression_estimator causal_testing.estimation.cubic_spline_estimator causal_testing.estimation.effect_estimate causal_testing.estimation.experimental_estimator causal_testing.estimation.genetic_programming_regression_fitter causal_testing.estimation.instrumental_variable_estimator causal_testing.estimation.ipcw_estimator causal_testing.estimation.linear_regression_estimator causal_testing.estimation.logistic_regression_estimator causal_testing.estimation.multinomial_regression_estimator causal_testing.main causal_testing.specification causal_testing.specification.causal_dag causal_testing.specification.scenario causal_testing.specification.variable causal_testing.surrogate causal_testing.surrogate.causal_surrogate_assisted causal_testing.surrogate.surrogate_search_algorithms causal_testing.testing causal_testing.testing.base_test_case causal_testing.testing.causal_effect causal_testing.testing.causal_test_adequacy causal_testing.testing.causal_test_case causal_testing.testing.causal_test_result causal_testing.testing.effect causal_testing.testing.intervention causal_testing.testing.metamorphic_relation causal_testing.utils causal_testing.utils.validation

multi_objective_fitness() (causal_testing.discovery.nsga_discovery.NSGADiscovery method) MultinomialRegressionEstimator (class in causal_testing.estimation.multinomial_regression_estimator) mut_insert() (in module causal_testing.estimation.genetic_programming_regression_fitter) mutate() (causal_testing.estimation.genetic_programming_regression_fitter.GP method)

N

name (causal_testing.specification.variable.Variable attribute) Negative (class in causal_testing.testing.causal_effect)

Node (in module causal_testing.specification.causal_dag) NoEffect (class in causal_testing.testing.causal_effect) NSGADiscovery (class in causal_testing.discovery.nsga_discovery)

O

outcome_variable (causal_testing.testing.base_test_case.BaseTestCase attribute)

Output (class in causal_testing.specification.variable) output_path (causal_testing.main.CausalTestingPaths attribute)

P

parse_args() (in module causal_testing.main) populate (causal_testing.specification.variable.Meta attribute)

Positive (class in causal_testing.testing.causal_effect) preprocess_data() (causal_testing.estimation.ipcw_estimator.IPCWEstimator method) proper_causal_pathway() (causal_testing.specification.causal_dag.CausalDAG method)

R

reciprocal() (in module causal_testing.estimation.genetic_programming_regression_fitter) RegressionEstimator (class in causal_testing.estimation.abstract_regression_estimator) regressor (causal_testing.estimation.abstract_regression_estimator.RegressionEstimator property) (causal_testing.estimation.cubic_spline_estimator.CubicSplineRegressionEstimator attribute) (causal_testing.estimation.linear_regression_estimator.LinearRegressionEstimator attribute) (causal_testing.estimation.logistic_regression_estimator.LogisticRegressionEstimator attribute) (causal_testing.estimation.multinomial_regression_estimator.MultinomialRegressionEstimator attribute)

relationship (causal_testing.surrogate.causal_surrogate_assisted.SimulationResult attribute) remove_cycles() (causal_testing.discovery.abstract_discovery.Discovery method) repair() (causal_testing.estimation.genetic_programming_regression_fitter.GP method) run_gp() (causal_testing.estimation.genetic_programming_regression_fitter.GP method) run_system() (causal_testing.estimation.experimental_estimator.ExperimentalEstimator method) run_tests() (causal_testing.main.CausalTestingFramework method) run_tests_in_batches() (causal_testing.main.CausalTestingFramework method) run_with_config() (causal_testing.surrogate.causal_surrogate_assisted.Simulator method)

S

save_results() (causal_testing.main.CausalTestingFramework method) Scenario (class in causal_testing.specification.scenario) Scenario Execution search() (causal_testing.surrogate.causal_surrogate_assisted.SearchAlgorithm method) (causal_testing.surrogate.surrogate_search_algorithms.GeneticSearchAlgorithm method) SearchAlgorithm (class in causal_testing.surrogate.causal_surrogate_assisted) setup() (causal_testing.main.CausalTestingFramework method) setup_covariates() (causal_testing.estimation.abstract_regression_estimator.RegressionEstimator method) setup_fault_t_do() (causal_testing.estimation.ipcw_estimator.IPCWEstimator method) setup_fault_time() (causal_testing.estimation.ipcw_estimator.IPCWEstimator method) setup_logging() (in module causal_testing.main)

setup_xo_t_do() (causal_testing.estimation.ipcw_estimator.IPCWEstimator method) ShouldCause (class in causal_testing.testing.metamorphic_relation) ShouldNotCause (class in causal_testing.testing.metamorphic_relation) shutdown() (causal_testing.surrogate.causal_surrogate_assisted.Simulator method) simple_cycle() (in module causal_testing.discovery.abstract_discovery) simplify() (causal_testing.estimation.genetic_programming_regression_fitter.GP method) SimulationResult (class in causal_testing.surrogate.causal_surrogate_assisted) Simulator (class in causal_testing.surrogate.causal_surrogate_assisted) SomeEffect (class in causal_testing.testing.causal_effect) split() (causal_testing.estimation.genetic_programming_regression_fitter.GP method) startup() (causal_testing.surrogate.causal_surrogate_assisted.Simulator method) sum_test_outcomes() (causal_testing.discovery.hill_climber_discovery.HillClimberDiscovery method)

T

T (in module causal_testing.specification.variable) TEST (causal_testing.main.Command attribute) Test Oracle test_config_path (causal_testing.main.CausalTestingPaths attribute) TestResult (in module causal_testing.discovery.abstract_discovery) to_dataframe() (causal_testing.surrogate.causal_surrogate_assisted.SimulationResult method) to_df() (causal_testing.estimation.effect_estimate.EffectEstimate method) to_dict() (causal_testing.estimation.effect_estimate.EffectEstimate method) (causal_testing.testing.causal_test_adequacy.DAGAdequacy method) (causal_testing.testing.causal_test_adequacy.DataAdequacy method) (causal_testing.testing.causal_test_result.CausalTestResult method)

to_dot_string() (causal_testing.specification.causal_dag.CausalDAG method) to_json_stub() (causal_testing.testing.metamorphic_relation.MetamorphicRelation method) (causal_testing.testing.metamorphic_relation.ShouldCause method) (causal_testing.testing.metamorphic_relation.ShouldNotCause method) TOTAL (causal_testing.testing.effect.Effect attribute) treatment_columns() (causal_testing.estimation.abstract_regression_estimator.RegressionEstimator method) treatment_variable (causal_testing.testing.base_test_case.BaseTestCase attribute) type (causal_testing.estimation.effect_estimate.EffectEstimate attribute) typestring() (causal_testing.specification.variable.Variable method)

V

validate_paths() (causal_testing.main.CausalTestingPaths method) value (causal_testing.estimation.effect_estimate.EffectEstimate attribute)

Variable (class in causal_testing.specification.variable) version (in module causal_testing._version) version_tuple (in module causal_testing._version)

W

write_dot() (causal_testing.discovery.abstract_discovery.Discovery method)